T011080058

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Info

  Species:
Sympetrum vicinum
  Lib_identifier:
INSbttTDRAAPEI-13
  Individuals:
N/A
  Stage:
  Sex:
  Project:
1KITE Project
  Subproject:
Proj_100list
  Submitter:
Karl Kjer
  Preservation Method:

Collection Records

  Country:
  State / Prefecture / Canton / Province:
  District / County:
  City / National Park / Area:
  Institution / University:
  Locality comments (Borough / Address, further details):
  Latitude:
  Longitude:
  Altitude (m):
  Labstock / Shop:
  Labstock comments:
  Collecting Date (from):
  Collecting Date (to):
  Collecting Date (discontiguous):
  Collector:
  Determined by:

Organ/Tissue

Brief Process

  Identifier_bgi:
T011080058
  rna_identifier:
SZYR11080648_B
  Vial_tag:
TN24
  Arrived_date:
2011-08-8
  Rna_ext_begin_date:
2011-08-22
  Rna_ext_result:
N
  Lib_const_begin_date:
2011-09-15
  Lib_const_result:
Y
  Seq_begin_date:
2011-09-28
  Seq_finished_date:
2011-11-7
  Asm_begin_date:
2011-11-14
  Asm_finished_date:
2011-12-26
  Transport:
Y
  Proj_100list:
Y
  Extra_note:

Map More Detail

  • RNA Extractions


    Report
      Report No.:
    TSZe11090502
      Tube No.:
    1
      Concentrantion(ng/uL):
    756.0
      Volume(ul):
    35.0000
      Total Mass(ug):
    26.46
      RIN:
    6.2
      28S/18S:
    0.0
      Library Type:
      Test Result:
    Unqualified
      Remark:
    Degraded, partner can hazard a try to construct the library.
      Peak:

    Usage
    • Total Volume.:
    • Remaining:

  • Sequencing

    Library Construction


    Library Process
      Filling Date:
    2011-09-21
      Operator:
    王旭阳、梁丽丝、郑邦烈
      QC Result:
    合格
      QPCR(concentration):
    54.83
      2100 Result:
    合格
      Fragment Length(bp):
    255.153
      Library Submit Date:
    2011-09-23
      Pooling Date:
      Remarks:

    Usage
    • Total Volume.: 15.0000
    • Remaining: 11.91

    Transcriptome Sequencing:


    Raw Data
      Library:
    INSbttTDRAAPEI-13
      Library_full_ID:
    111015_I297_FCD05HRACXX_L8_INSbttTDRAAPEI-13
      RawClusters:
    3521217
      PFclusters:
    3302858
      % PF:
    94.1
      FirstCyclelnt:
      TotalReads:
    9441076
      TotalBases:
    2832322800
      Length:
    150;150
      %Phasing:
    0.172;0.125
      %Prephasing:
    0.244;0.234
      %Q20:
    93.64;90.47
      %Q30:
    86.76;82.39
      %GC:
    43.97;44.12
      %ErrorRate:
      %Align:
      %UniqPair:
      InsertSize:
      InsertSizeSD:
      %index0mismatch:
    98.6
      %index1mismatch:
    1.3
    • %base.png:
    • qual.png:

    Statistics of Filtering
      Library_full_ID:
    111015_I297_FCD05HRACXX_L8_INSbttTDRAAPEI-13
      total_zise:
    2832322800
      low_quality:
    198353550
      N-num Size:
    238500
      is_adapter:
    28554450
      duplication:
    0
      output_size:
    2499946500
      single_size:
    105229800

  • Raw Data

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  • Phylogenetic Analysis

    Gene Name Refer DB Length Tools

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