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  • T011080409/T011080410/T011080411/T011080412/T011080413/T011080414/T011080622

T011080409/T011080410/T011080411/T011080412/T011080413/T011080414/T011080622

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Info

  Species:
Tricholepidion sp.
  Lib_identifier:
INSbttTJRAAPEI-19
  Individuals:
N/A
  Stage:
  Sex:
  Project:
1KITE Project
  Subproject:
Proj_100list
  Submitter:
Karl Kjer
  Preservation Method:

Collection Records

  Country:
  State / Prefecture / Canton / Province:
  District / County:
  City / National Park / Area:
  Institution / University:
  Locality comments (Borough / Address, further details):
  Latitude:
  Longitude:
  Altitude (m):
  Labstock / Shop:
  Labstock comments:
  Collecting Date (from):
  Collecting Date (to):
  Collecting Date (discontiguous):
  Collector:
  Determined by:

Organ/Tissue

Brief Process

  Identifier_bgi:
T011080409/T011080410/T011080411/T011080412/T011080413/T011080414/T011080622
  rna_identifier:
SZYR11090081_A
  Vial_tag:
0408 11-16A
  Arrived_date:
2011-08-18
  Rna_ext_begin_date:
2011-09-2
  Rna_ext_result:
Y
  Lib_const_begin_date:
2011-09-15
  Lib_const_result:
Y
  Seq_begin_date:
2011-09-28
  Seq_finished_date:
2011-11-7
  Asm_begin_date:
2011-11-14
  Asm_finished_date:
2011-12-26
  Transport:
Y
  Proj_100list:
Y
  Extra_note:
In Ralph's 1_KITE_100_specice list "Tricholepidion gertschi"

Map More Detail

  • RNA Extractions


    Report
      Report No.:
    TSZe11091403
      Tube No.:
    1
      Concentrantion(ng/uL):
    875.0
      Volume(ul):
    30.0000
      Total Mass(ug):
    26.25
      RIN:
    6.1
      28S/18S:
    0.0
      Library Type:
      Test Result:
    Qualified
      Remark:
      Peak:

    Usage
    • Total Volume.:
    • Remaining:

  • Sequencing

    Library Construction


    Library Process
      Filling Date:
    2011-09-22
      Operator:
    余越、邹婷、刘金克（学习）
      QC Result:
    合格
      QPCR(concentration):
    125.74
      2100 Result:
    合格
      Fragment Length(bp):
    256.036
      Library Submit Date:
    2011-09-23
      Pooling Date:
      Remarks:

    Usage
    • Total Volume.: 15.0000
    • Remaining: 11.57

    Transcriptome Sequencing:


    Raw Data
      Library:
    INSbttTJRAAPEI-19
      Library_full_ID:
    111015_I297_FCD05HRACXX_L1_INSbttTJRAAPEI-19
      RawClusters:
    3912852
      PFclusters:
    3622151
      % PF:
    92.9
      FirstCyclelnt:
      TotalReads:
    10842464
      TotalBases:
    3252739200
      Length:
    150;150
      %Phasing:
    0.172;0.125
      %Prephasing:
    0.244;0.234
      %Q20:
    92.97;89.94
      %Q30:
    85.35;81.31
      %GC:
    44.04;44.17
      %ErrorRate:
      %Align:
      %UniqPair:
      InsertSize:
      InsertSizeSD:
      %index0mismatch:
    98.2
      %index1mismatch:
    1.7
    • %base.png:
    • qual.png:

    Statistics of Filtering
      Library_full_ID:
    111015_I297_FCD05HRACXX_L1_INSbttTJRAAPEI-19
      total_zise:
    3252739200
      low_quality:
    167694600
      N-num Size:
    364350
      is_adapter:
    8489100
      duplication:
    0
      output_size:
    2969214300
      single_size:
    106976850

  • Raw Data

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  • Phylogenetic Analysis

    Gene Name Refer DB Length Tools

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