T011091199

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Info

  Species:
  Lib_identifier:
INShauTAARAAPEI-90
  Individuals:
N/A
  Stage:
  Sex:
  Project:
  Subproject:
  Submitter:
Ralph Peters
  Preservation Method:

Collection Records

  Country:
  State / Prefecture / Canton / Province:
  District / County:
  City / National Park / Area:
  Institution / University:
  Locality comments (Borough / Address, further details):
  Latitude:
  Longitude:
  Altitude (m):
  Labstock / Shop:
  Labstock comments:
  Collecting Date (from):
  Collecting Date (to):
  Collecting Date (discontiguous):
  Collector:
  Determined by:

Organ/Tissue

Brief Process

  Identifier_bgi:
T011091199
  rna_identifier:
SZYR11100095_A
  Vial_tag:
2.01_Mare
  Arrived_date:
2011-09-29
  Rna_ext_begin_date:
2011-10-10
  Rna_ext_result:
Y
  Lib_const_begin_date:
2011-10-20
  Lib_const_result:
Y
  Seq_begin_date:
2011-11-25
  Seq_finished_date:
2011-12-21
  Asm_begin_date:
2011-12-21
  Asm_finished_date:
2011-12-26
  Transport:
Y
  Proj_100list:
Y
  Extra_note:
precious
  • RNA Extractions


    Report
      Report No.:
    TSZe11101704
      Tube No.:
    1
      Concentrantion(ng/uL):
    1041.0
      Volume(ul):
    40.0000
      Total Mass(ug):
    41.64
      RIN:
    7.4
      28S/18S:
    0.0
      Library Type:
      Test Result:
    Qualified
      Remark:
      Peak:

    Usage
    • Total Volume.:
    • Remaining:
  • Sequencing

    Library Construction


    Library Process
      Filling Date:
    2011-11-11
      Operator:
    陈治,艾洁,黎友秀,周玉俊
      QC Result:
    合格
      QPCR(concentration):
    35.90
      2100 Result:
    合格
      Fragment Length(bp):
    252
      Library Submit Date:
    2011-11-12
      Pooling Date:
      Remarks:

    Usage
    • Total Volume.: 15.0000
    • Remaining: 10.21

    Transcriptome Sequencing:


    Raw Data
      Library:
    INShauTAARAAPEI-90
      Library_full_ID:
    111126_I883_FCD0GUKACXX_L7_INShauTAARAAPEI-90
      RawClusters:
    4229825
      PFclusters:
    3825811
      % PF:
    90.8
      FirstCyclelnt:
      TotalReads:
    10309639
      TotalBases:
    3092891700
      Length:
    150;150
      %Phasing:
    0.138;0.119
      %Prephasing:
    0.158;0.159
      %Q20:
    92.59;89.70
      %Q30:
    83.54;80.68
      %GC:
    43.53;43.47
      %ErrorRate:
      %Align:
      %UniqPair:
      InsertSize:
      InsertSizeSD:
      %index0mismatch:
    99.1
      %index1mismatch:
    0.8
    • %base.png:
    • qual.png:

    Statistics of Filtering
      Library_full_ID:
    111126_I883_FCD0GUKACXX_L7_INShauTAARAAPEI-90
      total_zise:
    3092891700
      low_quality:
    150399600
      N-num Size:
    556800
      is_adapter:
    10041600
      duplication:
    0
      output_size:
    2818433700
      single_size:
    113460000
  • Raw Data

    Download Select Data ID File Name Data Type Data Format Data Size Release Date Authorization
  • Phylogenetic Analysis

    Gene Name Refer DB Length Tools