T011091211

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Info

  Species:
Perla marginata
  Lib_identifier:
INShauTALRAAPEI-93
  Individuals:
N/A
  Stage:
  Sex:
  Project:
1KITE Project
  Subproject:
Proj_100list
  Submitter:
Ralph Peters
  Preservation Method:

Collection Records

  Country:
  State / Prefecture / Canton / Province:
  District / County:
  City / National Park / Area:
  Institution / University:
  Locality comments (Borough / Address, further details):
  Latitude:
  Longitude:
  Altitude (m):
  Labstock / Shop:
  Labstock comments:
  Collecting Date (from):
  Collecting Date (to):
  Collecting Date (discontiguous):
  Collector:
  Determined by:

Organ/Tissue

Brief Process

  Identifier_bgi:
T011091211
  rna_identifier:
SZYR11100107_A
  Vial_tag:
2.13_Pema
  Arrived_date:
2011-09-29
  Rna_ext_begin_date:
2011-10-10
  Rna_ext_result:
N
  Lib_const_begin_date:
2011-10-20
  Lib_const_result:
Y
  Seq_begin_date:
2011-11-25
  Seq_finished_date:
2011-12-21
  Asm_begin_date:
2011-12-21
  Asm_finished_date:
2011-12-26
  Transport:
Y
  Proj_100list:
Y
  Extra_note:

Map More Detail

  • RNA Extractions


    Report
      Report No.:
    TSZe11101704
      Tube No.:
    1
      Concentrantion(ng/uL):
    1293.0
      Volume(ul):
    40.0000
      Total Mass(ug):
    51.72
      RIN:
    6.4
      28S/18S:
    0.0
      Library Type:
      Test Result:
    Unqualified
      Remark:
    Total amout is less than 10ug, the baseline is not smooth, sample partly degraded. Total amout is more than 5ug partner can hazard a try to construct the library.
      Peak:

    Usage
    • Total Volume.:
    • Remaining:

  • Sequencing

    Library Construction


    Library Process
      Filling Date:
    2011-11-17
      Operator:
    王旭阳、梁丽丝、李娟娟、郑邦烈
      QC Result:
    合格
      QPCR(concentration):
    65.70
      2100 Result:
    合格
      Fragment Length(bp):
    227
      Library Submit Date:
    2011-11-19
      Pooling Date:
      Remarks:

    Usage
    • Total Volume.: 15.0000
    • Remaining: 11.48

    Transcriptome Sequencing:


    Raw Data
      Library:
    INShauTALRAAPEI-93
      Library_full_ID:
    111126_I883_FCD0GUKACXX_L6_INShauTALRAAPEI-93
      RawClusters:
    4385093
      PFclusters:
    3933966
      % PF:
    90.0
      FirstCyclelnt:
      TotalReads:
    12099372
      TotalBases:
    3629811600
      Length:
    150;150
      %Phasing:
    0.138;0.119
      %Prephasing:
    0.158;0.159
      %Q20:
    91.77;88.93
      %Q30:
    81.94;79.15
      %GC:
    44.60;44.59
      %ErrorRate:
      %Align:
      %UniqPair:
      InsertSize:
      InsertSizeSD:
      %index0mismatch:
    98.9
      %index1mismatch:
    1
    • %base.png:
    • qual.png:

    Statistics of Filtering
      Library_full_ID:
    111126_I883_FCD0GUKACXX_L6_INShauTALRAAPEI-93
      total_zise:
    3629811600
      low_quality:
    177711000
      N-num Size:
    846300
      is_adapter:
    36945900
      duplication:
    0
      output_size:
    3288259800
      single_size:
    126048600

  • Raw Data

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  • Phylogenetic Analysis

    Gene Name Refer DB Length Tools

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