T011080168

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Info

  Species:
  Lib_identifier:
INSbttTIRAAPEI-18
  Individuals:
N/A
  Stage:
  Sex:
  Project:
  Subproject:
  Submitter:
Ralph Peters
  Preservation Method:

Collection Records

  Country:
  State / Prefecture / Canton / Province:
  District / County:
  City / National Park / Area:
  Institution / University:
  Locality comments (Borough / Address, further details):
  Latitude:
  Longitude:
  Altitude (m):
  Labstock / Shop:
  Labstock comments:
  Collecting Date (from):
  Collecting Date (to):
  Collecting Date (discontiguous):
  Collector:
  Determined by:

Organ/Tissue

Brief Process

  Identifier_bgi:
T011080168
  rna_identifier:
SZYR11090080_A
  Vial_tag:
2F
  Arrived_date:
2011-09-1
  Rna_ext_begin_date:
2011-05-19
  Rna_ext_result:
Y
  Lib_const_begin_date:
2011-09-15
  Lib_const_result:
Y
  Seq_begin_date:
2011-09-28
  Seq_finished_date:
2011-11-7
  Asm_begin_date:
2011-11-14
  Asm_finished_date:
2011-12-26
  Transport:
Y
  Proj_100list:
Y
  Extra_note:
  • RNA Extractions


    Report
      Report No.:
    TSZe11091405
      Tube No.:
    1
      Concentrantion(ng/uL):
    492.0
      Volume(ul):
    30.0000
      Total Mass(ug):
    14.76
      RIN:
    6.9
      28S/18S:
    0.0
      Library Type:
      Test Result:
    Qualified
      Remark:
      Peak:

    Usage
    • Total Volume.:
    • Remaining:
  • Sequencing

    Library Construction


    Library Process
      Filling Date:
    2011-09-22
      Operator:
    余越、邹婷、刘金克(学习)
      QC Result:
    合格
      QPCR(concentration):
    17.30
      2100 Result:
    合格
      Fragment Length(bp):
    245.033
      Library Submit Date:
    2011-09-23
      Pooling Date:
      Remarks:

    Usage
    • Total Volume.: 15.0000
    • Remaining: 7.8

    Transcriptome Sequencing:


    Raw Data
      Library:
    INSbttTIRAAPEI-18
      Library_full_ID:
    111015_I297_FCD05HRACXX_L1_INSbttTIRAAPEI-18
      RawClusters:
    3912852
      PFclusters:
    3622151
      % PF:
    92.9
      FirstCyclelnt:
      TotalReads:
    12511799
      TotalBases:
    3753539700
      Length:
    150;150
      %Phasing:
    0.172;0.125
      %Prephasing:
    0.244;0.234
      %Q20:
    92.97;89.94
      %Q30:
    85.35;81.31
      %GC:
    44.04;44.17
      %ErrorRate:
      %Align:
      %UniqPair:
      InsertSize:
      InsertSizeSD:
      %index0mismatch:
    98.4
      %index1mismatch:
    1.3
    • %base.png:
    • qual.png:

    Statistics of Filtering
      Library_full_ID:
    111015_I297_FCD05HRACXX_L1_INSbttTIRAAPEI-18
      total_zise:
    3753539700
      low_quality:
    260593650
      N-num Size:
    417750
      is_adapter:
    17880750
      duplication:
    0
      output_size:
    3324744000
      single_size:
    149903550
  • Raw Data

    Download Select Data ID File Name Data Type Data Format Data Size Release Date Authorization
  • Phylogenetic Analysis

    Gene Name Refer DB Length Tools