011046371

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Info

  Species:
Prorhinotermes simplex
  Lib_identifier:
INSbusTBMRAAPEI-78
  Individuals:
N/A
  Stage:
  Sex:
  Project:
1KITE Project
  Subproject:
Proj_100list
  Submitter:
Ralph Peters
  Preservation Method:

Collection Records

  Country:
  State / Prefecture / Canton / Province:
  District / County:
  City / National Park / Area:
  Institution / University:
  Locality comments (Borough / Address, further details):
  Latitude:
  Longitude:
  Altitude (m):
  Labstock / Shop:
  Labstock comments:
  Collecting Date (from):
  Collecting Date (to):
  Collecting Date (discontiguous):
  Collector:
  Determined by:

Organ/Tissue

Brief Process

  Identifier_bgi:
011046371
  rna_identifier:
011051890
  Vial_tag:
Prorhinotermes simplex
  Arrived_date:
2011-05-18
  Rna_ext_begin_date:
2011-05-19
  Rna_ext_result:
Y
  Lib_const_begin_date:
2011-06-1
  Lib_const_result:
Y
  Seq_begin_date:
2011-07-13
  Seq_finished_date:
2011-09-1
  Asm_begin_date:
2011-09-13
  Asm_finished_date:
2011-10-1
  Transport:
Y
  Proj_100list:
Y
  Extra_note:

Map More Detail

  • RNA Extractions


    Report
      Report No.:
    TSZe11052001
      Tube No.:
    1
      Concentrantion(ng/uL):
    820
      Volume(ul):
    40.0000
      Total Mass(ug):
    32.8
      RIN:
    7.9
      28S/18S:
    1.2
      Library Type:
      Test Result:
    Qualified
      Remark:
      Peak:

    Usage
    • Total Volume.:
    • Remaining:

  • Sequencing

    Library Construction


    Library Process
      Filling Date:
    2011-07-4
      Operator:
    曾令元、王旭阳、梁丽丝
      QC Result:
    合格
      QPCR(concentration):
    89.23
      2100 Result:
    合格
      Fragment Length(bp):
    261.515
      Library Submit Date:
    2011-07-4
      Pooling Date:
      Remarks:

    Usage
    • Total Volume.:
    • Remaining:

    Transcriptome Sequencing:


    Raw Data
      Library:
    INSbusTBMRAAPEI-78
      Library_full_ID:
    110724_I224_FCD0490ACXX_L8_INSbusTBMRAAPEI-78
      RawClusters:
    1244641
      PFclusters:
    1214364
      % PF:
    97.6
      FirstCyclelnt:
      TotalReads:
    3567068
      TotalBases:
    1070120400
      Length:
    150;150
      %Phasing:
    0.307;0.221
      %Prephasing:
    0.399;0.428
      %Q20:
    88.22;79.16
      %Q30:
    79.95;70.83
      %GC:
    43.80;43.97
      %ErrorRate:
      %Align:
    97.81;96.65
      %UniqPair:
      InsertSize:
    104
      InsertSizeSD:
      %index0mismatch:
    99
      %index1mismatch:
    0.9
    • %base.png:
    • qual.png:

    Statistics of Filtering
      Library_full_ID:
    110724_I224_FCD0490ACXX_L8_INSbusTBMRAAPEI-78
      total_zise:
    1070120400
      low_quality:
    105056100
      N-num Size:
    135900
      is_adapter:
    7207050
      duplication:
    0
      output_size:
    874550400
      single_size:
    83170950
    Raw Data
      Library:
    INSbusTBMRAAPEI-78
      Library_full_ID:
    110817_I809_FCD05CDACXX_L3_INSbusTBMRAAPEI-78
      RawClusters:
    3631515
      PFclusters:
    3373949
      % PF:
    92.9
      FirstCyclelnt:
      TotalReads:
    9833457
      TotalBases:
    2950037100
      Length:
    150;150
      %Phasing:
    0.159;0.145
      %Prephasing:
    0.221;0.241
      %Q20:
    92.97;91.78
      %Q30:
    87.03;85.06
      %GC:
    43.34;43.33
      %ErrorRate:
      %Align:
    90.97;96.78
      %UniqPair:
      InsertSize:
    104
      InsertSizeSD:
      %index0mismatch:
    98.6
      %index1mismatch:
    1.3
    • %base.png:
    • qual.png:

    Statistics of Filtering
      Library_full_ID:
    110817_I809_FCD05CDACXX_L3_INSbusTBMRAAPEI-78
      total_zise:
    2950037100
      low_quality:
    127859850
      N-num Size:
    383550
      is_adapter:
    25114950
      duplication:
    0
      output_size:
    2706273300
      single_size:
    90405450

  • Raw Data

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  • Phylogenetic Analysis

    Gene Name Refer DB Length Tools

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