1KITE Database

Description

Info

Species:

Cheumatopsyche sp.

Lib_identifier:

INSbttTCRAAPEI-92

Individuals:

N/A

Stage:

Sex:

Project:

1KITE Project

Subproject:

Proj_100list

Submitter:

Karl Kjer

Preservation Method:

Collection Records

Country:

State / Prefecture / Canton / Province:

District / County:

City / National Park / Area:

Institution / University:

Locality comments (Borough / Address, further details):

Latitude:

Longitude:

Altitude (m):

Labstock / Shop:

Labstock comments:

Collecting Date (from):

Collecting Date (to):

Collecting Date (discontiguous):

Collector:

Determined by:

Organ/Tissue

Brief Process

Identifier_bgi:

T011070292

rna_identifier:

SZYR11080621_C

Vial_tag:

MN260611-C1/C2/C3/C4

Arrived_date:

2011-07-8

Rna_ext_begin_date:

2011-08-18

Rna_ext_result:

Lib_const_begin_date:

2011-09-9

Lib_const_result:

Seq_begin_date:

2011-09-28

Seq_finished_date:

2011-11-7

Asm_begin_date:

2011-11-14

Asm_finished_date:

2011-12-26

Transport:

Proj_100list:

Extra_note:

Map More Detail

Methods

RNA Extractions

Report

  Report No.:

TSZe11090204

  Tube No.:

1

  Concentrantion(ng/uL):

920.0

  Volume(ul):

35.0000

  Total Mass(ug):

32.2

  RIN:

9.2

  28S/18S:

0.0

  Library Type:

  Test Result:

Qualified

  Remark:

  Peak:

Usage
- Total Volume.:
- Remaining:
Sequencing

Library Construction

Library Process

  Filling Date:

2011-09-19

  Operator:

余越、邹婷、刘金克（学习）

  QC Result:

合格

  QPCR(concentration):

38.74

  2100 Result:

合格

  Fragment Length(bp):

251

  Library Submit Date:

2011-09-21

  Pooling Date:

  Remarks:

Usage
- Total Volume.: 15.0000
- Remaining: 10.68
Transcriptome Sequencing:

Raw Data
  Library:

INSbttTCRAAPEI-92

  Library_full_ID:

111015_I297_FCD05HRACXX_L1_INSbttTCRAAPEI-92

  RawClusters:

3912852

  PFclusters:

3622151

  % PF:

92.9

  FirstCyclelnt:

  TotalReads:

12206512

  TotalBases:

3661953600

  Length:

150;150

  %Phasing:

0.172;0.125

  %Prephasing:

0.244;0.234

  %Q20:

92.97;89.94

  %Q30:

85.35;81.31

  %GC:

44.04;44.17

  %ErrorRate:

  %Align:

  %UniqPair:
  InsertSize:

  InsertSizeSD:

  %index0mismatch:

98.4

  %index1mismatch:

1.5
- %base.png:
- qual.png:
Statistics of Filtering

  Library_full_ID:

111015_I297_FCD05HRACXX_L1_INSbttTCRAAPEI-92

  total_zise:

3661953600

  low_quality:

232760400

  N-num Size:

414300

  is_adapter:

59131500

  duplication:

0

  output_size:

3239678700

  single_size:

129968700

Raw Data

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Data

Result Data

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Genes

Phylogenetic Analysis

Gene Name	Refer DB	Length	Tools

Literatures

1. Phylogenomics resolves the timing and pattern of insect evolution

2. Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution.”

T011070292

Info

Collection Records

Organ/Tissue

Brief Process

Map More Detail

RNA Extractions

Report

Usage

Sequencing

Library Construction

Library Process

Usage

Transcriptome Sequencing:

Raw Data

Statistics of Filtering

Raw Data

Result Data

Phylogenetic Analysis

1. Phylogenomics resolves the timing and pattern of insect evolution

2. Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution.”

Links

Database List

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