1KITE Database

Description

Info

Species:

Corydalus cornutus

Lib_identifier:

INSbttTKRAAPEI-18

Individuals:

N/A

Stage:

Sex:

Project:

1KITE Project

Subproject:

Proj_100list

Submitter:

Karl Kjer

Preservation Method:

Collection Records

Country:

State / Prefecture / Canton / Province:

District / County:

City / National Park / Area:

Institution / University:

Locality comments (Borough / Address, further details):

Latitude:

Longitude:

Altitude (m):

Labstock / Shop:

Labstock comments:

Collecting Date (from):

Collecting Date (to):

Collecting Date (discontiguous):

Collector:

Determined by:

Organ/Tissue

Brief Process

Identifier_bgi:

T011070297

rna_identifier:

SZYR11080623_D

Vial_tag:

TN090611-6

Arrived_date:

2011-07-8

Rna_ext_begin_date:

2011-08-18

Rna_ext_result:

Lib_const_begin_date:

2011-09-28

Lib_const_result:

Seq_begin_date:

2011-10-18

Seq_finished_date:

2011-11-7

Asm_begin_date:

2011-11-14

Asm_finished_date:

2011-12-26

Transport:

Proj_100list:

Extra_note:

Map More Detail

Methods

RNA Extractions

Report

  Report No.:

TSZe11090204

  Tube No.:

1

  Concentrantion(ng/uL):

765.0

  Volume(ul):

45.0000

  Total Mass(ug):

34.425

  RIN:

5.8

  28S/18S:

0.0

  Library Type:

  Test Result:

Unqualified

  Remark:

Degraded,partner can hazard a try to construct the library.

  Peak:

Usage
- Total Volume.:
- Remaining:
Sequencing

Library Construction

Library Process

  Filling Date:

2011-10-10

  Operator:

邓思华、余越、邹婷、刘金克（学习）

  QC Result:

合格

  QPCR(concentration):

38.89

  2100 Result:

合格

  Fragment Length(bp):

243

  Library Submit Date:

2011-10-11

  Pooling Date:

  Remarks:

Usage
- Total Volume.: 15.0000
- Remaining: 11.46
Transcriptome Sequencing:

Raw Data
  Library:

INSbttTKRAAPEI-18

  Library_full_ID:

111015_I297_FCD05HRACXX_L8_INSbttTKRAAPEI-18

  RawClusters:

3521217

  PFclusters:

3302858

  % PF:

94.1

  FirstCyclelnt:

  TotalReads:

12775127

  TotalBases:

3832538100

  Length:

150;150

  %Phasing:

0.172;0.125

  %Prephasing:

0.244;0.234

  %Q20:

93.64;90.47

  %Q30:

86.76;82.39

  %GC:

43.97;44.12

  %ErrorRate:

  %Align:

  %UniqPair:
  InsertSize:

  InsertSizeSD:

  %index0mismatch:

99.2

  %index1mismatch:

0.7
- %base.png:
- qual.png:
Statistics of Filtering

  Library_full_ID:

111015_I297_FCD05HRACXX_L8_INSbttTKRAAPEI-18

  total_zise:

3832538100

  low_quality:

181859550

  N-num Size:

329100

  is_adapter:

39534600

  duplication:

0

  output_size:

3502298400

  single_size:

108516450

Raw Data

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Data

Result Data

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Genes

Phylogenetic Analysis

Gene Name	Refer DB	Length	Tools

Literatures

1. Phylogenomics resolves the timing and pattern of insect evolution

2. Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution.”

T011070297

Info

Collection Records

Organ/Tissue

Brief Process

Map More Detail

RNA Extractions

Report

Usage

Sequencing

Library Construction

Library Process

Usage

Transcriptome Sequencing:

Raw Data

Statistics of Filtering

Raw Data

Result Data

Phylogenetic Analysis

1. Phylogenomics resolves the timing and pattern of insect evolution

2. Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution.”

Links

Database List

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